Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.
Identifieur interne : 002241 ( Main/Exploration ); précédent : 002240; suivant : 002242Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.
Auteurs : Juliana Stival Sena [Canada] ; Isabelle Giguère ; Brian Boyle ; Philippe Rigault ; Inanc Birol ; Andrea Zuccolo ; Kermit Ritland ; Carol Ritland ; Joerg Bohlmann ; Steven Jones ; Jean Bousquet (allergologue) [France] ; John MackaySource :
- BMC plant biology [ 1471-2229 ] ; 2014.
Descripteurs français
- KwdFr :
- ARN messager (génétique), ARN messager (métabolisme), Analyse de profil d'expression de gènes (MeSH), Bases de données génétiques (MeSH), Exons (génétique), Gènes de plante (MeSH), Introns (génétique), Picea (génétique), Pinus (génétique), Régulation de l'expression des gènes végétaux (MeSH), Similitude de séquences d'acides nucléiques (MeSH), Séquence nucléotidique (MeSH), Séquences répétées d'acides nucléiques (génétique), Taille du génome (MeSH), Évolution moléculaire (MeSH).
- MESH :
- génétique : ARN messager, Exons, Introns, Picea, Pinus, Séquences répétées d'acides nucléiques.
- métabolisme : ARN messager.
- Analyse de profil d'expression de gènes, Bases de données génétiques, Gènes de plante, Régulation de l'expression des gènes végétaux, Similitude de séquences d'acides nucléiques, Séquence nucléotidique, Taille du génome, Évolution moléculaire.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Databases, Genetic (MeSH), Evolution, Molecular (MeSH), Exons (genetics), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), Genome Size (MeSH), Introns (genetics), Picea (genetics), Pinus (genetics), RNA, Messenger (genetics), RNA, Messenger (metabolism), Repetitive Sequences, Nucleic Acid (genetics), Sequence Homology, Nucleic Acid (MeSH).
- MESH :
- chemical , genetics : RNA, Messenger.
- genetics : Exons, Introns, Picea, Pinus, Repetitive Sequences, Nucleic Acid.
- chemical , metabolism : RNA, Messenger.
- Base Sequence, Databases, Genetic, Evolution, Molecular, Gene Expression Profiling, Gene Expression Regulation, Plant, Genes, Plant, Genome Size, Sequence Homology, Nucleic Acid.
Abstract
BACKGROUND
A positive relationship between genome size and intron length is observed across eukaryotes including Angiosperms plants, indicating a co-evolution of genome size and gene structure. Conifers have very large genomes and longer introns on average than most plants, but impacts of their large genome and longer introns on gene structure has not be described.
RESULTS
Gene structure was analyzed for 35 genes of Picea glauca obtained from BAC sequencing and genome assembly, including comparisons with A. thaliana, P. trichocarpa and Z. mays. We aimed to develop an understanding of impact of long introns on the structure of individual genes. The number and length of exons was well conserved among the species compared but on average, P. glauca introns were longer and genes had four times more intronic sequence than Arabidopsis, and 2 times more than poplar and maize. However, pairwise comparisons of individual genes gave variable results and not all contrasts were statistically significant. Genes generally accumulated one or a few longer introns in species with larger genomes but the position of long introns was variable between plant lineages. In P. glauca, highly expressed genes generally had more intronic sequence than tissue preferential genes. Comparisons with the Pinus taeda BACs and genome scaffolds showed a high conservation for position of long introns and for sequence of short introns. A survey of 1836 P. glauca genes obtained by sequence capture mostly containing introns <1 Kbp showed that repeated sequences were 10× more abundant in introns than in exons.
CONCLUSION
Conifers have large amounts of intronic sequence per gene for seed plants due to the presence of few long introns and repetitive element sequences are ubiquitous in their introns. Results indicate a complex landscape of intron sizes and distribution across taxa and between genes with different expression profiles.
DOI: 10.1186/1471-2229-14-95
PubMed: 24734980
PubMed Central: PMC4108047
Affiliations:
- Canada, France
- Languedoc-Roussillon, Occitanie (région administrative), Québec
- Montpellier, Québec (ville)
- Centre hospitalier universitaire de Montpellier, Université Laval, Université de Montpellier
Links toward previous steps (curation, corpus...)
Le document en format XML
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Systems and Integrative Biology, 1030 rue de la Médecine, Université Laval, Québec, QC G1V 0A6, Canada. juliana.sena.1@ulaval.ca.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Center for Forest Research and Institute for Systems and Integrative Biology, 1030 rue de la Médecine, Université Laval, Québec, QC G1V 0A6</wicri:regionArea><orgName type="university">Université Laval</orgName><placeName><settlement type="city">Québec (ville)</settlement><region type="state">Québec</region></placeName></affiliation></author><author><name sortKey="Giguere, Isabelle" sort="Giguere, Isabelle" uniqKey="Giguere I" first="Isabelle" last="Giguère">Isabelle Giguère</name></author><author><name sortKey="Boyle, Brian" sort="Boyle, Brian" uniqKey="Boyle B" first="Brian" last="Boyle">Brian Boyle</name></author><author><name sortKey="Rigault, Philippe" sort="Rigault, Philippe" uniqKey="Rigault P" first="Philippe" last="Rigault">Philippe Rigault</name></author><author><name 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Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Genes, Plant (MeSH)</term><term>Genome Size (MeSH)</term><term>Introns (genetics)</term><term>Picea (genetics)</term><term>Pinus (genetics)</term><term>RNA, Messenger (genetics)</term><term>RNA, Messenger (metabolism)</term><term>Repetitive Sequences, Nucleic Acid (genetics)</term><term>Sequence Homology, Nucleic Acid (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN messager (génétique)</term><term>ARN messager (métabolisme)</term><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Bases de données génétiques (MeSH)</term><term>Exons (génétique)</term><term>Gènes de plante (MeSH)</term><term>Introns (génétique)</term><term>Picea (génétique)</term><term>Pinus (génétique)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Similitude de séquences d'acides nucléiques (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Séquences répétées d'acides nucléiques (génétique)</term><term>Taille du génome (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Messenger</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Exons</term><term>Introns</term><term>Picea</term><term>Pinus</term><term>Repetitive Sequences, Nucleic Acid</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN messager</term><term>Exons</term><term>Introns</term><term>Picea</term><term>Pinus</term><term>Séquences répétées d'acides nucléiques</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>RNA, Messenger</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ARN messager</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Databases, Genetic</term><term>Evolution, Molecular</term><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term><term>Genes, Plant</term><term>Genome Size</term><term>Sequence Homology, Nucleic Acid</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Bases de données génétiques</term><term>Gènes de plante</term><term>Régulation de l'expression des gènes végétaux</term><term>Similitude de séquences d'acides nucléiques</term><term>Séquence nucléotidique</term><term>Taille du génome</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>A positive relationship between genome size and intron length is observed across eukaryotes including Angiosperms plants, indicating a co-evolution of genome size and gene structure. Conifers have very large genomes and longer introns on average than most plants, but impacts of their large genome and longer introns on gene structure has not be described.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>Gene structure was analyzed for 35 genes of Picea glauca obtained from BAC sequencing and genome assembly, including comparisons with A. thaliana, P. trichocarpa and Z. mays. We aimed to develop an understanding of impact of long introns on the structure of individual genes. The number and length of exons was well conserved among the species compared but on average, P. glauca introns were longer and genes had four times more intronic sequence than Arabidopsis, and 2 times more than poplar and maize. However, pairwise comparisons of individual genes gave variable results and not all contrasts were statistically significant. Genes generally accumulated one or a few longer introns in species with larger genomes but the position of long introns was variable between plant lineages. In P. glauca, highly expressed genes generally had more intronic sequence than tissue preferential genes. Comparisons with the Pinus taeda BACs and genome scaffolds showed a high conservation for position of long introns and for sequence of short introns. A survey of 1836 P. glauca genes obtained by sequence capture mostly containing introns <1 Kbp showed that repeated sequences were 10× more abundant in introns than in exons.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSION</b></p><p>Conifers have large amounts of intronic sequence per gene for seed plants due to the presence of few long introns and repetitive element sequences are ubiquitous in their introns. Results indicate a complex landscape of intron sizes and distribution across taxa and between genes with different expression profiles.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24734980</PMID><DateCompleted><Year>2014</Year><Month>12</Month><Day>09</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN><JournalIssue CitedMedium="Internet"><Volume>14</Volume><PubDate><Year>2014</Year><Month>Apr</Month><Day>16</Day></PubDate></JournalIssue><Title>BMC plant biology</Title><ISOAbbreviation>BMC Plant Biol</ISOAbbreviation></Journal><ArticleTitle>Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.</ArticleTitle><Pagination><MedlinePgn>95</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2229-14-95</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">A positive relationship between genome size and intron length is observed across eukaryotes including Angiosperms plants, indicating a co-evolution of genome size and gene structure. Conifers have very large genomes and longer introns on average than most plants, but impacts of their large genome and longer introns on gene structure has not be described.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Gene structure was analyzed for 35 genes of Picea glauca obtained from BAC sequencing and genome assembly, including comparisons with A. thaliana, P. trichocarpa and Z. mays. We aimed to develop an understanding of impact of long introns on the structure of individual genes. The number and length of exons was well conserved among the species compared but on average, P. glauca introns were longer and genes had four times more intronic sequence than Arabidopsis, and 2 times more than poplar and maize. However, pairwise comparisons of individual genes gave variable results and not all contrasts were statistically significant. Genes generally accumulated one or a few longer introns in species with larger genomes but the position of long introns was variable between plant lineages. In P. glauca, highly expressed genes generally had more intronic sequence than tissue preferential genes. Comparisons with the Pinus taeda BACs and genome scaffolds showed a high conservation for position of long introns and for sequence of short introns. A survey of 1836 P. glauca genes obtained by sequence capture mostly containing introns <1 Kbp showed that repeated sequences were 10× more abundant in introns than in exons.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">Conifers have large amounts of intronic sequence per gene for seed plants due to the presence of few long introns and repetitive element sequences are ubiquitous in their introns. Results indicate a complex landscape of intron sizes and distribution across taxa and between genes with different expression profiles.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Stival Sena</LastName><ForeName>Juliana</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Center for Forest Research and Institute for Systems and Integrative Biology, 1030 rue de la Médecine, Université Laval, Québec, QC G1V 0A6, Canada. juliana.sena.1@ulaval.ca.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Giguère</LastName><ForeName>Isabelle</ForeName><Initials>I</Initials></Author><Author ValidYN="Y"><LastName>Boyle</LastName><ForeName>Brian</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Rigault</LastName><ForeName>Philippe</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Birol</LastName><ForeName>Inanc</ForeName><Initials>I</Initials></Author><Author ValidYN="Y"><LastName>Zuccolo</LastName><ForeName>Andrea</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Ritland</LastName><ForeName>Kermit</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Ritland</LastName><ForeName>Carol</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Bohlmann</LastName><ForeName>Joerg</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Jones</LastName><ForeName>Steven</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Bousquet</LastName><ForeName>Jean</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Mackay</LastName><ForeName>John</ForeName><Initials>J</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>04</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Plant Biol</MedlineTA><NlmUniqueID>100967807</NlmUniqueID><ISSNLinking>1471-2229</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012333">RNA, Messenger</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D030541" MajorTopicYN="N">Databases, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005091" MajorTopicYN="N">Exons</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="Y">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059646" MajorTopicYN="N">Genome Size</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007438" MajorTopicYN="N">Introns</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D028222" MajorTopicYN="N">Picea</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D028223" MajorTopicYN="N">Pinus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012091" MajorTopicYN="N">Repetitive Sequences, Nucleic Acid</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012689" MajorTopicYN="N">Sequence Homology, Nucleic Acid</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>09</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>04</Month><Day>09</Day></PubMedPubDate><PubMedPubDate 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IdType="pubmed">19125217</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2005;6:31</Citation><ArticleIdList><ArticleId IdType="pubmed">15713233</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2000 May;17(5):773-81</Citation><ArticleIdList><ArticleId IdType="pubmed">10779538</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol Resour. 2011 May;11(3):541-9</Citation><ArticleIdList><ArticleId IdType="pubmed">21481212</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6118-23</Citation><ArticleIdList><ArticleId IdType="pubmed">11983904</ArticleId></ArticleIdList></Reference><Reference><Citation>Tree Physiol. 2008 Jul;28(7):1099-110</Citation><ArticleIdList><ArticleId IdType="pubmed">18450574</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2008;9:484</Citation><ArticleIdList><ArticleId IdType="pubmed">18854048</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2012;13:434</Citation><ArticleIdList><ArticleId IdType="pubmed">22931377</ArticleId></ArticleIdList></Reference><Reference><Citation>Cytogenet Genome Res. 2005;110(1-4):462-7</Citation><ArticleIdList><ArticleId IdType="pubmed">16093699</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Evol Biol. 2010;10:22</Citation><ArticleIdList><ArticleId IdType="pubmed">20100325</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Evol. 1999 Sep;49(3):376-84</Citation><ArticleIdList><ArticleId IdType="pubmed">10473779</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2007;8(2):R21</Citation><ArticleIdList><ArticleId IdType="pubmed">17309804</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2009 Nov 20;326(5956):1112-5</Citation><ArticleIdList><ArticleId IdType="pubmed">19965430</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2014 Mar;196(3):891-909</Citation><ArticleIdList><ArticleId IdType="pubmed">24653211</ArticleId></ArticleIdList></Reference><Reference><Citation>Biom J. 2008 Jun;50(3):346-63</Citation><ArticleIdList><ArticleId IdType="pubmed">18481363</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1994 May 24;91(11):5163-7</Citation><ArticleIdList><ArticleId IdType="pubmed">8197201</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2009;4(2):e4332</Citation><ArticleIdList><ArticleId IdType="pubmed">19194510</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2008;3(8):e3093</Citation><ArticleIdList><ArticleId IdType="pubmed">18769727</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Rev Genet. 2002 May;3(5):329-41</Citation><ArticleIdList><ArticleId IdType="pubmed">11988759</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2009;9:106</Citation><ArticleIdList><ArticleId IdType="pubmed">19656416</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2008 Jan;18(1):188-96</Citation><ArticleIdList><ArticleId IdType="pubmed">18025269</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1999 Aug 1;27(15):3219-28</Citation><ArticleIdList><ArticleId IdType="pubmed">10454621</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Genet. 2000 Jun;16(6):276-7</Citation><ArticleIdList><ArticleId IdType="pubmed">10827456</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86</Citation><ArticleIdList><ArticleId IdType="pubmed">22110026</ArticleId></ArticleIdList></Reference><Reference><Citation>Planta. 2006 Jun;224(1):83-95</Citation><ArticleIdList><ArticleId IdType="pubmed">16425030</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2013 May 30;497(7451):579-84</Citation><ArticleIdList><ArticleId IdType="pubmed">23698360</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2010;11:420</Citation><ArticleIdList><ArticleId IdType="pubmed">20609256</ArticleId></ArticleIdList></Reference><Reference><Citation>In Silico Biol. 2004;4(4):387-93</Citation><ArticleIdList><ArticleId IdType="pubmed">15217358</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2002 Dec;19(12):2346-52</Citation><ArticleIdList><ArticleId IdType="pubmed">12446829</ArticleId></ArticleIdList></Reference><Reference><Citation>Yeast. 2000 Apr;17(1):22-36</Citation><ArticleIdList><ArticleId IdType="pubmed">10797599</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Biol. 1990 Oct 5;215(3):403-10</Citation><ArticleIdList><ArticleId IdType="pubmed">2231712</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2014;15(3):R59</Citation><ArticleIdList><ArticleId IdType="pubmed">24647006</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2007;7:17</Citation><ArticleIdList><ArticleId IdType="pubmed">17397551</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation><ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2002 Aug;31(4):415-8</Citation><ArticleIdList><ArticleId IdType="pubmed">12134150</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2011;6(1):e16214</Citation><ArticleIdList><ArticleId IdType="pubmed">21283709</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2011 Sep;157(1):14-28</Citation><ArticleIdList><ArticleId IdType="pubmed">21730200</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2013 Jun 15;29(12):1492-7</Citation><ArticleIdList><ArticleId IdType="pubmed">23698863</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Biotechnol. 2009;9:75</Citation><ArticleIdList><ArticleId IdType="pubmed">19715565</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2003 Nov 21;302(5649):1401-4</Citation><ArticleIdList><ArticleId IdType="pubmed">14631042</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2011 May;43(5):476-81</Citation><ArticleIdList><ArticleId IdType="pubmed">21478890</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2010 Mar 1;26(5):680-2</Citation><ArticleIdList><ArticleId IdType="pubmed">20053844</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Genet. 2006 Oct;22(10):528-32</Citation><ArticleIdList><ArticleId IdType="pubmed">16934358</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2000 Dec 14;408(6814):796-815</Citation><ArticleIdList><ArticleId IdType="pubmed">11130711</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2005 Dec;139(4):1612-24</Citation><ArticleIdList><ArticleId IdType="pubmed">16339807</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Genet. 1999;33:479-532</Citation><ArticleIdList><ArticleId IdType="pubmed">10690416</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2011;12:145</Citation><ArticleIdList><ArticleId IdType="pubmed">21392393</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2005 Jun;21 Suppl 1:i351-8</Citation><ArticleIdList><ArticleId IdType="pubmed">15961478</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2005 Sep 15;437(7057):376-80</Citation><ArticleIdList><ArticleId IdType="pubmed">16056220</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 1999 Sep;9(9):868-77</Citation><ArticleIdList><ArticleId IdType="pubmed">10508846</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2000 Nov;156(3):1175-90</Citation><ArticleIdList><ArticleId IdType="pubmed">11063693</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Biol. 2012;10:84</Citation><ArticleIdList><ArticleId IdType="pubmed">23102090</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 1998 Jun;15(6):770-3</Citation><ArticleIdList><ArticleId IdType="pubmed">9615458</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2007 Sep 27;449(7161):463-7</Citation><ArticleIdList><ArticleId IdType="pubmed">17721507</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Canada</li><li>France</li></country><region><li>Languedoc-Roussillon</li><li>Occitanie (région 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